Reaserach Area:

1. Next-generation sequencing and Third-generation sequencing data analysis in transcriptomic area: I am interested in design of combinatorial algorithms and software to handle the Next-generation sequencing data, especially in plants and human RNA-seq data analysis. Currently my work is directly responding to the huge amount RNA-seq data analysis for multiple plant species.

2. Combinatorial Algorithm Design and Development of Bioinformatics Software & Web Server: I am interested in design of combinatorial algorithms based on graph models for bioinformatics problems: genome synthetic,gene expression data bi-clustering, regulatory motif analysis, orthology relationship identification, and microbial genome organization elucidation. I am also interested in implementing these algorithms into interactive web servers and intuitive standalone cross-platform software

• Next-generation sequencing and Third-generation sequencing data analysis in transcriptomic area: I am interested in design of combinatorial algorithms and software to handle the Next-generation sequencing data, especially in plants and human RNA-seq data analysis.
• Combinatorial Algorithm Design and Development of Bioinformatics Software & Web Server: I am interested in design of combinatorial algorithms based on graph models for bioinformatics problems: genome synthetic,gene expression data bi-clustering, regulatory motif analysis and so on.

• 暂无内容

• XIn Chen*, Wen-Chi Chou*, Qin Ma and Ying Xu.SeqTU: A web server for identification of bacterial transcription units.2016
• Xin Chen*, Qin Ma*, Xizeng Mao...,Ying Xu.DOOR 2.0: presenting operons and their functions through dynamic and integrated views.2013,42 (D1):D654-D659
• Chen, Xin*;Mao, Xizeng; * Ma, Qin*;..., Ying Xu.Genome-Scale Identification of Cell-Wall Related Genes in Switchgrass through Comparative Genomics and Computational Analyses of Transcriptomic Data.BioEnergy Researc....2015,9 (1):172-180